The HPC cluster
***************

.. _obtain_cluster_account:

Obtaining an user account
=========================

You should receive a pair of username/password after following the `ICT check-in <https://intranet.donders.ru.nl/index.php?id=practicalitie>`_ at DCCN. If you do not have a account, ask the `TG helpdesk <mailto:helpdesk@fcdonders.ru.nl>`_.

.. note::
    The user account here is **NOT** the account (e.g. u-number) given by the Radboud University.

Accessing the cluster
=====================

.. toctree::
   :maxdepth: 2

   Inside DCCN <access-internal.rst>
   Outside DCCN <access-external.rst>

Using the cluster
=================

.. toctree::
    :maxdepth: 2

    Slurm cluster <compute_slurm.rst>
    Using supported software <software-usage.rst>
    Using IDE for coding <ide-usage.rst>
    Using GenAI for coding <genai/index.rst>
    Maintaining supported software <software-maintenance.rst>
    Best practices <best_practices.rst>
    
Application software
====================

.. toctree::
    :maxdepth: 1

    Environment modules <exercise_env_modules/exercise.rst>
    Matlab <exercise_matlab/exercise.rst>
    Freesurfer <exercise_freesurfer/exercise.rst>
    Python <exercise_python/exercise.rst>
    R <exercise_R/index.rst>

Exercises
=========

.. toctree::
    :maxdepth: 1

    Interactive job <exercise_interactive/exercise.rst>
    Batch job <exercise_simple/exercise.rst>
    Data analysis in parallel <exercise_da/exercise.rst>

.. Resource estimation <exercise_resource/exercise.rst>